［1］邹权，郭茂祖，张涛涛． RNA 二级结构预测方法综述［J］． 电子学报，2008，36( 2) : 331-336． Zou Quan，Guo Maozu，Zhang Taotao． A review of RNA secondary structure prediction algorithms ［J］． Acta Electronica Sinica， 2008，36( 2) : 331-336． ( in Chinese)
［2］ Lyngsa R B，Pedersen C N． Pseudoknots in RNA secondary structures［C］/ / Computational Molecular Biology ( RECOMB’ 00) ． New York: ACM，2000: 201-209．
［3］van Batenburg F H D，Gultyaev A P，Pleij C W A． An APL-programmed genetic algorithm for the prediction of RNA secondary structure［J］． Theor Biol，1995，174: 269-280．
［4］任清华，莫忠良，陶玉敏． 预测RNA 二级结构的一种遗传模拟退火算法［J］． 武汉大学学报: 理学版，2004，50( 1) : 23- 28． Ren Qinghua，Mo Zhongliang，Tao Yumin． A genetic simulated annealing algorithm for RNA secondary structure prediction ［J］． Journal of Wuhan University: Nature Science Edition，2004，50( 1) : 23-28． ( in Chinese)
［5］Kay C W，Alain A D，Andrew G H． RNA Predict: An evolutionary algorithm for RNA secondary structure prediction［J］． Transactions on Computational Biology and Bioinformatics，2008，5( 1) : 25-41．
［6］M Neehling，A P Engelbrecht． Determining RNA Secondary Structure Using Set-based Particle Swarm Optimization: Evolution-ary Computation［M］． New York: IEEE Press，2006: 1 670-1 677．
［7］Michael Geis，Martin Middendorf． A particle swarm optimizer for finding minimum free energy RNA secondary structures ［C］/ / Swarm Intelligence Symposium 2007． New York: IEEE Press，2007: 1-8．
［8］陈自郁，何中市，何静媛． 预测RNA 二级结构离散粒子群优化算法［J］． 深圳大学学报: 理工版，2009，26( 3) : 272-277． Chen Ziyu，He Zhongshi，He Jingyuan． Discrete particle swarm optimization algorithm for RNA secondary structures ［J］． Journal of Shenzhen University: Science and Engineering Edition，2009，26( 3) : 272-277． ( in Chinese)
［9］胡桂武，彭宏． 基于免疫粒子群集成的RNA 二级结构预测算法［J］． 计算机工程与应用， 2007，43( 3) : 26-29． Hu Guiwu，Peng Hong． Algorithm based on immune PSO ensemble for predicting RNA secondary structure ［J］． Computer Engineering and Applications，2007，43( 3) : 26-29． ( in Chinese)
［10］何静媛，邹东升，何中市． RNA 二级结构预测的自适应鱼群算法模型［J］． 系统仿真学报， 2010，22( 6) : 1 370-1 374． He Jingyuan，Zou Dongshen，He Zhongshi． Self-adaptive artificial fish swarm algorithm for RNA secondary structure prediction ［J］． Journal of System Simulation，2010，22( 6) : 1 370-1 374． ( in Chinese)
［11］Jun Yu，Changhai Zhang，Yuanning Liu， et al． Simulating the folding pathway of RNA secondary structure using the modified ant colony algorithm［J］． Bionic Engineering，2001( 7) : 382-389．
［12］Muzaffar M，Eusuff，Kevin E Lansey． Optimization of water distribution network design using the shuffled frog leaping algorithm ［J］． Journal of Water Resources Planning and Management，2003，129( 3) : 210-225．
［13］韩毅，蔡建湖，周根贵，等． 随机蛙跳算法的研究进展［J］． 计算机科学，2010，37( 7) : 16-19． Han Yi，Cai Jianhu，Zhou Gengui，et al． Advances in shuffled frog leaping algorithm ［J］． Computer Science，2010，37 ( 7) : 16-19． ( in Chinese)
［14］王翼飞，史定华． 生物信息学-智能优化算法及其应用［M］． 北京: 化学工业出版社，2006: 178-210． Wang Yifei，Shi Dinghua． Bioinformatics-Intelligent Optimization Algorithms and Its Application ［M］． Beijing: Chemical Industry Press，2006: 178-210． ( in Chinese)
［15］Muzaffar Eusuff，Kevin Lansey，Fayzul Pasha． Shuffled frog-leaping algorithm: a memetic meta-heuristic for discrete optimization ［J］． Engineering Optimization，2006，8( 2) : 129-154．
［16］Elbeltagi E，Hegazy T，Grierson D． Comparison among five volutionary-based optimization algorithms［J］． Advanced Engineering Informatics，2005，19( 1) : 43-53．
［17］Muker M，Mathews D H，Turner D H． Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide in RNA biochemistry and biotechnology［M］/ / Barciszewski J，Clark B F C，eds． NATO ASI Series． Dordrecht，NL: Kluwer Academic Publishers，1999: 11-43．
［18］Jens Reeder，Robert Giegerich． Design，implementation and evaluation of a practical pseudoknots folding algorithm based on thermodynamics［J］． BMC Bioinformatics，2004( 5) : 104．